Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-dehydro-6-deoxyglucose reductase | PH7735_03679 | Not Available | Positive | 3907423 - 3908400 | 34763.9 |
| glycogen synthase | PH7735_03680 | O32272 | Positive | 3908397 - 3909671 | 46462.1 |
| mycofactocin system glycosyltransferase | PH7735_03681 | Not Available | Positive | 3909668 - 3910639 | 35961.2 |
| putative oxidoreductase ycjs | PH7735_03682 | Not Available | Positive | 3910659 - 3912764 | 76299.4 |
| tyrosine-protein kinase etk | PH7735_03683 | Not Available | Positive | 3912831 - 3913589 | 27931.5 |
| autotransporter assembly factor tamb | PH7735_03684 | Not Available | Negative | 3913630 - 3917076 | 120719.0 |
| autotransporter assembly factor tama | PH7735_03685 | D2TN56 | Negative | 3917076 - 3918890 | 65475.8 |
| chemotaxis protein motb | PH7735_03686 | P0AF07 | Positive | 3919132 - 3919965 | 30008.5 |
| flagellar hook protein flge | PH7735_03687 | Q8FUS9 | Positive | 3920064 - 3921365 | 45210.2 |
| flagellar hook-associated protein flgk | PH7735_03688 | Not Available | Positive | 3921394 - 3922821 | 50779.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
