Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| electron transfer flavoprotein large subunit | PH7735_00329 | P38974 | Negative | 361079 - 362008 | 31161.9 |
| electron transfer flavoprotein small subunit | PH7735_00330 | P38975 | Negative | 362008 - 362766 | 26808.6 |
| 1,2-epoxyphenylacetyl-coa isomerase | PH7735_00331 | Q8XA35 | Positive | 363058 - 363846 | 28202.6 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | PH7735_00332 | P64804 | Negative | 363934 - 364506 | 20937.8 |
| hypothetical protein | PH7735_00333 | Not Available | Negative | 364511 - 364729 | 7792.79 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | PH7735_00334 | P0AFP5 | Negative | 364795 - 365628 | 30686.7 |
| sh3 domain protein | PH7735_00335 | Not Available | Negative | 365740 - 366363 | 22127.1 |
| dna topoisomerase 4 subunit a | PH7735_00336 | Q59749 | Positive | 366519 - 368861 | 87212.7 |
| putative membrane protein | PH7735_00337 | Not Available | Positive | 368965 - 370242 | 47394.8 |
| metalloprotease loip precursor | PH7735_00338 | Not Available | Positive | 370239 - 371357 | 39944.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
