Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| neu5ac permease | PH7735_03659 | Q9KR66 | Negative | 3869292 - 3871358 | 75084.1 |
| trap transporter solute receptor, dctp family | PH7735_03660 | Q3J1R2 | Negative | 3871475 - 3872527 | 38229.9 |
| pyruvate dehydrogenase complex repressor | PH7735_03661 | P0ACL6 | Positive | 3872862 - 3873635 | 28786.2 |
| isocitrate dehydrogenase | PH7735_03662 | P16100 | Positive | 3873825 - 3876038 | 78202.3 |
| hemolysin, chromosomal | PH7735_03663 | Not Available | Positive | 3876220 - 3878850 | 92065.3 |
| hypothetical protein | PH7735_03664 | Not Available | Positive | 3878913 - 3881846 | 108496.0 |
| n-glycosyltransferase | PH7735_03665 | Not Available | Positive | 3881863 - 3882687 | 29465.2 |
| lipopolysaccharide biosynthesis protein wzxc | PH7735_03666 | Not Available | Positive | 3882684 - 3884072 | 50210.4 |
| beta-ketoacyl-acyl-carrier-protein synthase i | PH7735_03667 | Q7TXL6 | Positive | 3884173 - 3890571 | 232097.0 |
| n-acetylglucosaminyl-diphospho-decaprenol l-rhamnosyltransferase | PH7735_03668 | Not Available | Positive | 3890568 - 3891581 | 37402.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
