Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c' precursor | PH7735_03639 | Not Available | Positive | 3848551 - 3848994 | 14909.0 |
| ni/fe-hydrogenase, b-type cytochrome subunit | PH7735_03640 | Not Available | Positive | 3849010 - 3849609 | 22084.3 |
| putative domain 1 | PH7735_03641 | Not Available | Positive | 3849661 - 3850080 | 15115.1 |
| putative cysteine desulfurase | PH7735_03642 | Q9V242 | Negative | 3850077 - 3851489 | 49998.5 |
| leucine-responsive regulatory protein | PH7735_03643 | F8DT24 | Positive | 3851616 - 3852083 | 17815.5 |
| dna-binding transcriptional repressor arsr | PH7735_03644 | Not Available | Positive | 3852216 - 3852548 | 11734.3 |
| arsenate reductase | PH7735_03645 | Not Available | Positive | 3852561 - 3853076 | 19105.4 |
| arsenical-resistance protein | PH7735_03646 | A6TP80 | Positive | 3853077 - 3854129 | 37092.6 |
| glyceraldehyde-3-phosphate dehydrogenase 3 | PH7735_03647 | P58559 | Positive | 3854142 - 3855152 | 37098.1 |
| putative integral membrane protein | PH7735_03648 | Not Available | Positive | 3855180 - 3856184 | 36508.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
