Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_03629 | Not Available | Negative | 3838805 - 3839488 | 24794.5 |
| homoserine dehydrogenase | PH7735_03630 | P29365 | Negative | 3839572 - 3840858 | 44737.9 |
| hypothetical protein | PH7735_03631 | Not Available | Negative | 3840988 - 3841230 | 8945.66 |
| hth-type transcriptional repressor kstr2 | PH7735_03632 | Not Available | Positive | 3841374 - 3841925 | 20539.4 |
| quercetin 2,3-dioxygenase | PH7735_03633 | P58112 | Negative | 3841965 - 3842879 | 33516.5 |
| long-chain-fatty-acid--coa ligase | PH7735_03634 | Q00594 | Positive | 3843089 - 3844696 | 58156.5 |
| putative enoyl-[acyl-carrier-protein] reductase ii | PH7735_03635 | Not Available | Positive | 3844874 - 3845866 | 35086.6 |
| phosphoglycerate mutase | PH7735_03636 | Not Available | Positive | 3845863 - 3846531 | 24496.1 |
| putative aminoglycoside phosphotransferase | PH7735_03637 | Q6JQN1 | Positive | 3846545 - 3847570 | 37456.5 |
| levodione reductase | PH7735_03638 | Q9LBG2 | Positive | 3847563 - 3848348 | 27209.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
