Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alkanal monooxygenase alpha chain | PH7735_03599 | Q6F9F6 | Positive | 3807320 - 3808357 | 39088.3 |
| betaine aldehyde dehydrogenase | PH7735_03600 | Q6F9F7 | Positive | 3808367 - 3809833 | 52625.6 |
| gcv operon activator | PH7735_03601 | P14145 | Negative | 3809830 - 3810795 | 36014.0 |
| aminomethyltransferase | PH7735_03602 | Not Available | Positive | 3810890 - 3813343 | 91094.3 |
| trimethylamine:corrinoid methyltransferase | PH7735_03603 | Not Available | Positive | 3813366 - 3814883 | 54936.8 |
| (2r)-3-sulfolactate dehydrogenase (nadp(+)) | PH7735_03604 | Not Available | Positive | 3814963 - 3815976 | 35047.8 |
| d-amino acid dehydrogenase small subunit | PH7735_03605 | B1M860 | Positive | 3815987 - 3817225 | 43903.9 |
| l-threonine dehydratase catabolic tdcb | PH7735_03606 | Q74FW6 | Negative | 3817232 - 3818443 | 43210.1 |
| na(+)-translocating nadh-quinone reductase subunit a | PH7735_03607 | A8GAB9 | Positive | 3819468 - 3820802 | 46958.4 |
| na(+)-translocating nadh-quinone reductase subunit b | PH7735_03608 | A4XSP4 | Positive | 3820806 - 3822014 | 43634.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
