Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spermidine/putrescine import atp-binding protein pota | PH7735_03589 | Q1GIE5 | Positive | 3798507 - 3799610 | 39229.3 |
| spermidine/putrescine transport system permease protein potb | PH7735_03590 | Not Available | Positive | 3799610 - 3801031 | 51992.0 |
| inner membrane abc transporter permease protein ydcv | PH7735_03591 | Not Available | Positive | 3801028 - 3801858 | 30188.6 |
| hypothetical protein | PH7735_03592 | Not Available | Positive | 3801855 - 3802562 | 25711.9 |
| putative pep-cterm system tpr-repeat lipoprotein | PH7735_03593 | Not Available | Negative | 3802613 - 3803161 | 20103.3 |
| histidinol phosphatase of the php family protein | PH7735_03594 | Not Available | Positive | 3803254 - 3804183 | 33443.0 |
| putative hth-type transcriptional regulator ydfh | PH7735_03595 | Not Available | Negative | 3804213 - 3804902 | 25278.3 |
| hypothetical protein | PH7735_03596 | Not Available | Positive | 3805012 - 3805614 | 21061.3 |
| 3-oxoadipate enol-lactonase 2 | PH7735_03597 | Q6F9F4 | Positive | 3805586 - 3806398 | 28451.8 |
| p-hydroxyphenylacetate 3-hydroxylase, reductase component | PH7735_03598 | Not Available | Positive | 3806395 - 3807315 | 32221.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
