Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose operon repressor | PH7735_03579 | O05103 | Negative | 3787225 - 3788256 | 37968.8 |
| hypothetical protein | PH7735_03580 | Not Available | Negative | 3788524 - 3789303 | 27487.1 |
| v-type sodium pump subunit b | PH7735_03581 | B2S1S7 | Positive | 3789662 - 3791023 | 49865.8 |
| v-atpase subunit d | PH7735_03582 | O83443 | Positive | 3791001 - 3791597 | 22761.9 |
| v-type atp synthase subunit i | PH7735_03583 | Q9PK88 | Positive | 3791594 - 3793390 | 65792.2 |
| v-type atp synthase subunit k | PH7735_03584 | Not Available | Positive | 3793387 - 3793833 | 15031.6 |
| v-type atp synthase subunit e | PH7735_03585 | Not Available | Positive | 3793830 - 3794507 | 24681.5 |
| hypothetical protein | PH7735_03586 | Not Available | Positive | 3794509 - 3795201 | 26094.6 |
| v-type sodium atpase catalytic subunit a | PH7735_03587 | O83441 | Positive | 3795198 - 3797048 | 67697.1 |
| spermidine/putrescine-binding periplasmic protein precursor | PH7735_03588 | Q9I6J0 | Positive | 3797189 - 3798310 | 40668.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
