Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoenolpyruvate carboxykinase | PH7735_00319 | Q5LVJ2 | Negative | 351715 - 353313 | 58628.1 |
| transcriptional regulatory protein creb | PH7735_00320 | P50350 | Positive | 353675 - 354376 | 26833.2 |
| sensor protein kinase walk | PH7735_00321 | P72292 | Positive | 354386 - 356107 | 62070.1 |
| hpr kinase/phosphorylase | PH7735_00322 | A4XIQ4 | Positive | 356111 - 356566 | 16014.5 |
| glmz(srna)-inactivating ntpase | PH7735_00323 | B9KSB7 | Positive | 356571 - 357497 | 34295.2 |
| eiiab-man | PH7735_00324 | Not Available | Positive | 357494 - 357886 | 13735.5 |
| phosphocarrier protein npr | PH7735_00325 | P23537 | Positive | 357891 - 358169 | 9377.22 |
| hypothetical protein | PH7735_00326 | Not Available | Positive | 358230 - 359087 | 32214.0 |
| putative 3-hydroxybutyryl-coa dehydrogenase | PH7735_00327 | Q45223 | Negative | 359152 - 360027 | 32051.0 |
| hypothetical protein | PH7735_00328 | Not Available | Positive | 360190 - 361008 | 30785.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
