Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucose-6-phosphate 1-dehydrogenase | PH7735_03569 | Not Available | Positive | 3776011 - 3777462 | 54034.6 |
| 6-phosphogluconolactonase | PH7735_03570 | Not Available | Positive | 3777465 - 3778163 | 24477.4 |
| phosphogluconate dehydratase | PH7735_03571 | Q9Z3S0 | Positive | 3778160 - 3779971 | 63101.4 |
| khg/kdpg aldolase | PH7735_03572 | Q15X88 | Positive | 3779975 - 3780616 | 21397.0 |
| mannitol 2-dehydrogenase | PH7735_03573 | P33216 | Negative | 3780724 - 3782196 | 53905.1 |
| sorbitol dehydrogenase | PH7735_03574 | Q59787 | Negative | 3782184 - 3782954 | 26894.0 |
| maltose/maltodextrin import atp-binding protein malk | PH7735_03575 | P54933 | Negative | 3782954 - 3783958 | 36710.2 |
| inner membrane abc transporter permease protein ycjp | PH7735_03576 | Q7LYX6 | Negative | 3783971 - 3784801 | 30493.3 |
| trehalose transport system permease protein suga | PH7735_03577 | P37730 | Negative | 3784812 - 3785678 | 31693.9 |
| putative abc transporter-binding protein precursor | PH7735_03578 | Q9I1E0 | Negative | 3785802 - 3787106 | 46694.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
