Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ycii-like protein | PH7735_03559 | Not Available | Negative | 3766932 - 3767318 | 13770.4 |
| putative malonic semialdehyde reductase rute | PH7735_03560 | A7HZ77 | Positive | 3767515 - 3768180 | 24712.3 |
| osmc-like protein | PH7735_03561 | Not Available | Positive | 3768188 - 3768646 | 16429.7 |
| c4-dicarboxylate-binding periplasmic protein precursor | PH7735_03562 | Not Available | Positive | 3768680 - 3769753 | 37922.4 |
| trap-type c4-dicarboxylate transport system, small permease component | PH7735_03563 | Not Available | Positive | 3769786 - 3770346 | 20386.6 |
| neu5ac permease | PH7735_03564 | Q9HU16 | Positive | 3770343 - 3771650 | 46244.4 |
| hydroxyquinol 1,2-dioxygenase | PH7735_03565 | Q471I0 | Positive | 3771660 - 3772526 | 32016.4 |
| making large colonies protein | PH7735_03566 | Not Available | Positive | 3772715 - 3773938 | 43830.9 |
| 2-dehydro-3-deoxygluconokinase | PH7735_03567 | Not Available | Positive | 3773941 - 3774867 | 32620.2 |
| glyceraldehyde-3-phosphate dehydrogenase 1 | PH7735_03568 | Not Available | Positive | 3774976 - 3776007 | 36985.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
