Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase, thermostable | PH7735_03549 | P42236 | Positive | 3754556 - 3756055 | 53180.2 |
| membrane dipeptidase (peptidase family m19) | PH7735_03550 | E9CV02 | Positive | 3756055 - 3757035 | 37084.7 |
| hypothetical protein | PH7735_03551 | Not Available | Positive | 3757035 - 3758702 | 61986.3 |
| hypothetical protein | PH7735_03552 | Not Available | Positive | 3758699 - 3759271 | 19691.3 |
| (2r)-3-sulfolactate dehydrogenase (nadp(+)) | PH7735_03553 | Q0B9S2 | Positive | 3759290 - 3760300 | 33966.6 |
| elongation factor g | PH7735_03554 | Q55421 | Negative | 3760379 - 3762349 | 71269.9 |
| 2-isopropylmalate synthase | PH7735_03555 | Q8TW28 | Negative | 3762601 - 3763815 | 44460.6 |
| carbon starvation induced regulator | PH7735_03556 | P37335 | Positive | 3764159 - 3764806 | 24675.3 |
| stringent starvation protein a | PH7735_03557 | Not Available | Positive | 3764845 - 3765639 | 28817.7 |
| malonyl-coa decarboxylase (mcd) | PH7735_03558 | P12617 | Negative | 3765647 - 3766918 | 47010.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
