Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_03539 | Not Available | Positive | 3742375 - 3743796 | 50790.3 |
| guanidinobutyrase | PH7735_03540 | Q9I3S3 | Negative | 3743793 - 3744740 | 34510.4 |
| succinate-semialdehyde dehydrogenase | PH7735_03541 | Q9I6M5 | Negative | 3744927 - 3746402 | 52467.7 |
| 4-aminobutyrate aminotransferase puue | PH7735_03542 | P50457 | Negative | 3746403 - 3747680 | 45239.3 |
| hth-type transcriptional regulator puur | PH7735_03543 | Not Available | Positive | 3747825 - 3748397 | 20398.5 |
| glutamate decarboxylase | PH7735_03544 | O95470 | Negative | 3748409 - 3749830 | 51658.9 |
| putative integral membrane protein | PH7735_03545 | Not Available | Negative | 3749850 - 3750986 | 39576.7 |
| ksdd-like steroid dehydrogenase | PH7735_03546 | Q7D9A2 | Negative | 3751173 - 3752843 | 60628.1 |
| dna-binding transcriptional regulator envr | PH7735_03547 | Not Available | Positive | 3752922 - 3753569 | 24381.3 |
| cyn operon transcriptional activator | PH7735_03548 | P0ACR7 | Negative | 3753617 - 3754510 | 33209.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
