Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coenzyme pqq synthesis protein pqqa | PH7735_03529 | Q5LTB0 | Positive | 3734580 - 3734687 | 4110.82 |
| pyrroloquinoline quinone biosynthesis protein b | PH7735_03530 | Q5LTB1 | Positive | 3734711 - 3735598 | 31709.8 |
| pyrroloquinoline-quinone synthase | PH7735_03531 | Q5LTB2 | Positive | 3735595 - 3736347 | 28085.3 |
| pyrroloquinoline quinone biosynthesis protein d | PH7735_03532 | Q5LTB3 | Positive | 3736344 - 3736640 | 10547.9 |
| antilisterial bacteriocin subtilosin biosynthesis protein alba | PH7735_03533 | Q5LTB4 | Positive | 3736637 - 3737722 | 39490.0 |
| trap transporter solute receptor, dctp family | PH7735_03534 | Not Available | Positive | 3738137 - 3739168 | 37666.6 |
| trap-type c4-dicarboxylate transport system, small permease component | PH7735_03535 | Not Available | Positive | 3739183 - 3739854 | 24755.3 |
| neu5ac permease | PH7735_03536 | Not Available | Positive | 3739851 - 3741170 | 46147.4 |
| hypothetical protein | PH7735_03537 | Not Available | Positive | 3741184 - 3741681 | 17530.9 |
| hypothetical protein | PH7735_03538 | Not Available | Negative | 3741663 - 3742304 | 23277.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
