Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative isomerase yitf | PH7735_03499 | A9CEQ8 | Negative | 3703645 - 3704781 | 41700.7 |
| 4-hydroxy-tetrahydrodipicolinate synthase | PH7735_03500 | A9I3W2 | Negative | 3704769 - 3705674 | 32077.1 |
| putative l-lactate dehydrogenase operon regulatory protein | PH7735_03501 | O07007 | Negative | 3705786 - 3706526 | 27247.6 |
| dtdp-glucose 4,6-dehydratase | PH7735_03502 | Q88NN6 | Positive | 3706694 - 3707488 | 29083.1 |
| extracytoplasmic solute receptor protein yiao | PH7735_03503 | Q1QUN2 | Positive | 3707789 - 3708784 | 35601.4 |
| 2,3-diketo-l-gulonate trap transporter small permease protein yiam | PH7735_03504 | Not Available | Positive | 3708858 - 3709388 | 19447.7 |
| neu5ac permease | PH7735_03505 | P40800 | Positive | 3709391 - 3710674 | 45256.6 |
| 4-hydroxy-2-oxoglutarate aldolase | PH7735_03506 | Q9KBI9 | Positive | 3710767 - 3711489 | 26158.3 |
| l-lactate utilization operon repressor | PH7735_03507 | P0ACM1 | Positive | 3711465 - 3712208 | 27491.8 |
| cupin domain protein | PH7735_03508 | Not Available | Negative | 3712221 - 3712568 | 12528.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
