Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfoacetaldehyde acetyltransferase | PH7735_03489 | Not Available | Negative | 3692560 - 3694338 | 63936.8 |
| alcohol dehydrogenase | PH7735_03490 | Not Available | Negative | 3694375 - 3696006 | 59333.4 |
| extracytoplasmic solute receptor protein yiao | PH7735_03491 | Not Available | Positive | 3696124 - 3697356 | 45495.8 |
| trap-type c4-dicarboxylate transport system, small permease component | PH7735_03492 | Not Available | Positive | 3697459 - 3698127 | 25179.9 |
| neu5ac permease | PH7735_03493 | Not Available | Positive | 3698127 - 3699485 | 47783.2 |
| acetate operon repressor | PH7735_03494 | Q0K846 | Positive | 3699497 - 3700288 | 28794.9 |
| khg/kdpg aldolase | PH7735_03495 | Not Available | Negative | 3700336 - 3700980 | 21684.2 |
| 2-dehydro-3-deoxygluconokinase | PH7735_03496 | Q96XN9 | Negative | 3700982 - 3701923 | 33289.4 |
| l-lactate utilization operon repressor | PH7735_03497 | Not Available | Negative | 3701920 - 3702654 | 26381.2 |
| putative metal-dependent hydrolase of the tim-barrel fold protein | PH7735_03498 | A9CEQ7 | Negative | 3702770 - 3703624 | 31291.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
