Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_03479 | Not Available | Negative | 3682429 - 3683562 | 39716.1 |
| biopolymer transport protein exbd/tolr | PH7735_03480 | Not Available | Negative | 3683559 - 3683936 | 13428.4 |
| biopolymer transport protein exbd/tolr | PH7735_03481 | Not Available | Negative | 3683941 - 3684306 | 13393.3 |
| colicin uptake protein tolq | PH7735_03482 | Q55834 | Negative | 3684299 - 3684943 | 22726.7 |
| hypothetical protein | PH7735_03483 | Not Available | Negative | 3684949 - 3685413 | 16292.9 |
| putative gtp-binding protein yjia | PH7735_03484 | P24203 | Positive | 3685907 - 3686971 | 38022.6 |
| putative metal chaperone ycic | PH7735_03485 | P94400 | Positive | 3686974 - 3688185 | 45131.1 |
| l-arabonate dehydratase | PH7735_03486 | Q9A9Z2 | Negative | 3688324 - 3690120 | 64436.9 |
| 2-hydroxy-3-oxopropionate reductase | PH7735_03487 | Q949M8 | Positive | 3690482 - 3691378 | 30579.7 |
| phosphate acetyltransferase | PH7735_03488 | O52593 | Negative | 3691436 - 3692452 | 35639.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
