Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| liv-i protein f | PH7735_00309 | Not Available | Positive | 338648 - 339421 | 28623.8 |
| long-chain-fatty-acid--coa ligase fadd15 | PH7735_00310 | Q7TYX8 | Positive | 339424 - 341310 | 70148.9 |
| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor | PH7735_00311 | Not Available | Positive | 341351 - 342511 | 41016.9 |
| glutaryl-coa dehydrogenase | PH7735_00312 | I6Y3V5 | Positive | 342569 - 343747 | 43643.4 |
| acyl-coa dehydrogenase | PH7735_00313 | P63428 | Positive | 343752 - 344852 | 38560.8 |
| assimilatory nitrate reductase catalytic subunit | PH7735_00314 | Q795Y4 | Positive | 344873 - 346966 | 75591.5 |
| enamine/imine deaminase | PH7735_00315 | Not Available | Positive | 347039 - 347425 | 13852.8 |
| poly-beta-hydroxybutyrate polymerase | PH7735_00316 | O66392 | Positive | 347684 - 349450 | 65835.1 |
| enoyl-[acyl-carrier-protein] reductase | PH7735_00317 | P58380 | Positive | 349454 - 350230 | 27517.1 |
| phosphate acetyltransferase | PH7735_00318 | Not Available | Positive | 350234 - 351622 | 48668.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
