Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xaa-pro dipeptidase | PH7735_03469 | Q9S6S1 | Positive | 3672141 - 3673256 | 40220.8 |
| abc-type uncharacterized transport system, permease component | PH7735_03470 | D4GPW1 | Negative | 3673641 - 3674549 | 31002.0 |
| d-allose transporter subunit | PH7735_03471 | Not Available | Negative | 3674546 - 3675643 | 39061.2 |
| galactose/methyl galactoside import atp-binding protein mgla | PH7735_03472 | D4GPW3 | Negative | 3675643 - 3677154 | 55038.8 |
| purine-binding protein precursor | PH7735_03473 | Not Available | Negative | 3677159 - 3678262 | 38196.3 |
| hydroxydechloroatrazine ethylaminohydrolase | PH7735_03474 | P95442 | Negative | 3678288 - 3679670 | 50066.6 |
| maleylpyruvate isomerase | PH7735_03475 | Not Available | Negative | 3679672 - 3680331 | 23775.6 |
| putative methylxanthine n7-demethylase ndmc | PH7735_03476 | F0E1K6 | Negative | 3680328 - 3681173 | 31875.2 |
| methylxanthine n1-demethylase ndma | PH7735_03477 | Q60A55 | Negative | 3681170 - 3681820 | 23343.5 |
| hypothetical protein | PH7735_03478 | Not Available | Negative | 3682042 - 3682308 | 9850.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
