Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase dacc precursor | PH7735_03449 | P38422 | Negative | 3643003 - 3644178 | 42312.0 |
| rare lipoprotein a | PH7735_03450 | Not Available | Negative | 3644197 - 3645060 | 30468.1 |
| Trna-ser | Not Available | Not Available | Positive | 3645255 - 3645344 | Not Available |
| hypothetical protein | PH7735_03452 | Not Available | Negative | 3645701 - 3646354 | 23658.6 |
| integrase core domain protein | PH7735_03453 | Not Available | Positive | 3646401 - 3647108 | 28276.2 |
| hypothetical protein | PH7735_03454 | Not Available | Negative | 3647530 - 3650856 | 126690.0 |
| l-threonine kinase | PH7735_03455 | Not Available | Positive | 3651152 - 3652207 | 37619.2 |
| putative siderophore biosynthesis protein sbna | PH7735_03456 | Q79FV4 | Positive | 3652235 - 3653287 | 37896.5 |
| d-alanine--d-alanine ligase | PH7735_03457 | Q981V0 | Positive | 3653284 - 3654510 | 44210.2 |
| argininosuccinate lyase | PH7735_03458 | Q5WHY3 | Positive | 3654512 - 3655987 | 52065.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
