Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | PH7735_03399 | P08058 | Negative | 3592917 - 3593237 | 11115.2 |
| atp-dependent helicase/nuclease subunit a | PH7735_03400 | Q88U41 | Negative | 3593299 - 3596670 | 124266.0 |
| double-strand break repair protein addb | PH7735_03401 | Not Available | Negative | 3596670 - 3599600 | 108346.0 |
| glucose-1-phosphate adenylyltransferase | PH7735_03402 | Q9A2M1 | Negative | 3599593 - 3600285 | 24987.0 |
| putative phosphotransferase related to ser/thr protein kinases | PH7735_03403 | Q9A2M2 | Negative | 3600261 - 3601280 | 37945.3 |
| adp-binding protein | PH7735_03404 | Q1RGZ7 | Negative | 3601273 - 3601749 | 17532.9 |
| sensor protein divl | PH7735_03405 | Not Available | Negative | 3601795 - 3603333 | 56734.1 |
| sensor histidine kinase regb | PH7735_03406 | P0C0Z0 | Negative | 3603398 - 3604801 | 51824.9 |
| sco1/senc | PH7735_03407 | Q52720 | Positive | 3604890 - 3605513 | 22695.1 |
| response regulator prra | PH7735_03408 | Q53228 | Positive | 3605587 - 3606141 | 20272.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
