Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sporulation initiation inhibitor protein soj | PH7735_03379 | P0CAV7 | Negative | 3574672 - 3575481 | 29408.1 |
| ribosomal rna small subunit methyltransferase g | PH7735_03380 | Q1GCL8 | Negative | 3575474 - 3576100 | 23313.2 |
| glucose-inhibited division protein a | PH7735_03381 | Q16CZ6 | Negative | 3576097 - 3577959 | 67351.9 |
| trna modification gtpase mnme | PH7735_03382 | Q5LLM7 | Negative | 3577972 - 3579270 | 46380.1 |
| hypothetical protein | PH7735_03383 | P52156 | Negative | 3579281 - 3580552 | 47251.0 |
| putative membrane protein | PH7735_03384 | Q53229 | Negative | 3580710 - 3581159 | 17284.5 |
| maf-like protein ycef | PH7735_03385 | Q1GCM3 | Positive | 3581464 - 3582171 | 26611.4 |
| shikimate dehydrogenase | PH7735_03386 | A4WVZ4 | Positive | 3582168 - 3583001 | 29706.0 |
| dephospho-coa kinase | PH7735_03387 | Q5LLN2 | Positive | 3582998 - 3583591 | 21470.8 |
| dna polymerase iii subunit epsilon | PH7735_03388 | Q1RJM1 | Positive | 3583584 - 3584315 | 26848.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
