Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_00299 | Not Available | Positive | 323108 - 323752 | 23259.5 |
| cyclolysin | PH7735_00300 | Not Available | Negative | 323855 - 331756 | 265308.0 |
| transcriptional activator chrr | PH7735_00301 | Not Available | Negative | 331898 - 332539 | 22757.7 |
| sigma-k factor | PH7735_00302 | Not Available | Negative | 332536 - 333144 | 23216.7 |
| rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase | PH7735_00303 | Q9RPT1 | Negative | 333200 - 334009 | 27622.3 |
| hth-type transcriptional repressor kstr2 | PH7735_00304 | Not Available | Positive | 334123 - 334803 | 25747.9 |
| quinone oxidoreductase 1 | PH7735_00305 | Not Available | Positive | 334800 - 335834 | 36754.4 |
| liv-i protein h | PH7735_00306 | Not Available | Positive | 335913 - 336788 | 30693.5 |
| leucine/isoleucine/valine transporter permease subunit | PH7735_00307 | Not Available | Positive | 336793 - 337890 | 39941.4 |
| lipopolysaccharide export system atp-binding protein lptb | PH7735_00308 | Not Available | Positive | 337887 - 338651 | 28106.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
