Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent malic enzyme | PH7735_03369 | O30808 | Negative | 3563059 - 3565383 | 83762.8 |
| dna mismatch repair protein muts | PH7735_03370 | Q1GCK9 | Positive | 3565450 - 3568095 | 95711.1 |
| hypothetical protein | PH7735_03371 | P55140 | Negative | 3568096 - 3569154 | 39182.9 |
| hsp-70 cofactor | PH7735_03372 | Q3IYI4 | Negative | 3569190 - 3569750 | 20893.6 |
| heat-inducible transcription repressor hrca | PH7735_03373 | Q11B41 | Negative | 3569761 - 3570825 | 38770.3 |
| ribonuclease ph | PH7735_03374 | Q16D02 | Positive | 3570941 - 3571654 | 25335.5 |
| non-canonical purine ntp pyrophosphatase | PH7735_03375 | Q5LWF7 | Positive | 3571651 - 3572262 | 22153.1 |
| oxygen-independent coproporphyrinogen-iii oxidase 1 | PH7735_03376 | P52062 | Positive | 3572255 - 3573412 | 43874.9 |
| inner membrane protein yban | PH7735_03377 | P0AAR6 | Positive | 3573416 - 3573769 | 12715.0 |
| chromosome-partitioning protein parb | PH7735_03378 | P0CAV8 | Negative | 3573759 - 3574658 | 32771.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
