Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cca-adding enzyme | PH7735_03349 | A4IQ63 | Negative | 3541660 - 3542814 | 41510.3 |
| putative nudix hydrolase | PH7735_03350 | A4WBH1 | Negative | 3542811 - 3543407 | 21831.1 |
| heat shock protein 33 | PH7735_03351 | Q1QU53 | Negative | 3543400 - 3544383 | 35845.3 |
| rna pyrophosphohydrolase | PH7735_03352 | Not Available | Positive | 3544462 - 3544899 | 16183.5 |
| transcriptional regulatory protein afsq1 | PH7735_03353 | Q04942 | Negative | 3544896 - 3546128 | 44769.5 |
| tmao reductase sytem sensor tors | PH7735_03354 | Not Available | Positive | 3546326 - 3546646 | 11811.8 |
| hypothetical protein | PH7735_03355 | Not Available | Negative | 3546657 - 3547379 | 25676.2 |
| argininosuccinate synthase | PH7735_03356 | Q1GCK1 | Positive | 3547518 - 3548744 | 45517.3 |
| putative sterol carrier protein | PH7735_03357 | Not Available | Positive | 3548882 - 3549163 | 9881.07 |
| virulence-regulating protein virs | PH7735_03358 | Not Available | Negative | 3549717 - 3550703 | 36837.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
