Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutaredoxin-3 | PH7735_03339 | Q9HU55 | Negative | 3533026 - 3533283 | 9218.16 |
| dna utilization protein gntx | PH7735_03340 | Not Available | Negative | 3533321 - 3534154 | 30273.1 |
| biotin biosynthesis protein bioc | PH7735_03341 | O80543 | Positive | 3534191 - 3534886 | 25124.3 |
| ferrochelatase | PH7735_03342 | Q59735 | Positive | 3534938 - 3535996 | 40042.4 |
| hypothetical protein | PH7735_03343 | Not Available | Negative | 3536121 - 3536300 | 5747.1 |
| putative l,d-transpeptidase erfk/srfk precursor | PH7735_03344 | P05448 | Negative | 3536446 - 3537042 | 22385.5 |
| cysteine-rich secretory protein family protein | PH7735_03345 | Not Available | Positive | 3537212 - 3537790 | 20257.6 |
| l,d-transpeptidase catalytic domain | PH7735_03346 | P0AAA0 | Negative | 3537794 - 3538288 | 18396.3 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | PH7735_03347 | Q8G290 | Negative | 3538388 - 3539605 | 43186.9 |
| putative multidrug export atp-binding/permease protein | PH7735_03348 | Q57180 | Negative | 3539645 - 3541486 | 67301.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
