Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna repair protein radc | PH7735_03319 | Q5LWK3 | Positive | 3509607 - 3510368 | 28468.3 |
| phosphate binding protein | PH7735_03320 | Not Available | Negative | 3510365 - 3511921 | 56552.3 |
| hypothetical protein | PH7735_03321 | Not Available | Negative | 3511940 - 3512950 | 35838.5 |
| preprotein translocase subunit seca | PH7735_03322 | Q5LWK0 | Negative | 3513047 - 3515752 | 100773.0 |
| putative parvulin-type peptidyl-prolyl cis-trans isomerase precursor | PH7735_03323 | C5D6L9 | Positive | 3515925 - 3516776 | 30373.9 |
| arginine biosynthesis bifunctional protein argj | PH7735_03324 | Q5LWL6 | Positive | 3516780 - 3518009 | 42603.2 |
| ctp pyrophosphohydrolase | PH7735_03325 | P77788 | Positive | 3518009 - 3518407 | 14914.1 |
| hypothetical protein | PH7735_03326 | Not Available | Positive | 3518583 - 3518720 | 4689.8 |
| translation initiation factor if-2 | PH7735_03327 | Q1GCH2 | Negative | 3518796 - 3521297 | 89477.1 |
| hypothetical protein | PH7735_03328 | Not Available | Negative | 3521294 - 3521926 | 22233.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
