Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-glucose 4-epimerase | PH7735_03309 | B9J8R3 | Negative | 3499169 - 3500194 | 37591.0 |
| putative glycosyl transferase | PH7735_03310 | Not Available | Negative | 3500222 - 3501463 | 46003.1 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | PH7735_03311 | Q0AST1 | Negative | 3501460 - 3502260 | 29155.5 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | PH7735_03312 | P22255 | Negative | 3502260 - 3503057 | 28904.7 |
| polysialic acid transport protein kpsm | PH7735_03313 | Not Available | Positive | 3503175 - 3503996 | 30309.9 |
| putative membrane protein | PH7735_03314 | Not Available | Positive | 3503993 - 3504616 | 22246.1 |
| alpha-ketoglutarate-dependent dioxygenase alkb | PH7735_03315 | P0CAT7 | Negative | 3504627 - 3505232 | 22153.8 |
| heat shock protein 70 | PH7735_03316 | Q1GKS3 | Positive | 3505441 - 3507354 | 68739.2 |
| chaperone protein dnaj | PH7735_03317 | Q5LWJ5 | Positive | 3507438 - 3508574 | 40675.8 |
| glutamate/aspartate periplasmic-binding protein precursor | PH7735_03318 | Q9I402 | Negative | 3508647 - 3509486 | 29828.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
