Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigl modulation protein | PH7735_03299 | P17265 | Positive | 3487228 - 3487797 | 21101.9 |
| nitrogen regulatory protein | PH7735_03300 | P30335 | Positive | 3487841 - 3488305 | 16411.9 |
| sulfotransferase family protein | PH7735_03301 | Not Available | Negative | 3488306 - 3489745 | 54380.9 |
| core-2/i-branching enzyme | PH7735_03302 | Not Available | Negative | 3489752 - 3491449 | 64703.7 |
| hypothetical protein | PH7735_03303 | Not Available | Negative | 3491446 - 3492456 | 39818.4 |
| putative glycosyl transferase group 1 | PH7735_03304 | Not Available | Negative | 3492511 - 3493665 | 43317.2 |
| udp-glucose 4-epimerase | PH7735_03305 | P26503 | Negative | 3493748 - 3494734 | 36173.5 |
| utp--glucose-1-phosphate uridylyltransferase | PH7735_03306 | P27897 | Negative | 3494756 - 3495649 | 32595.3 |
| polysaccharide export protein wza | PH7735_03307 | P22236 | Negative | 3495817 - 3496929 | 39897.3 |
| udp-n-acetyl-alpha-d-glucosamine c6 dehydratase | PH7735_03308 | P39853 | Positive | 3497225 - 3499144 | 70171.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
