Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_03289 | Not Available | Negative | 3477235 - 3478260 | 38592.9 |
| rhamnan synthesis protein f | PH7735_03290 | B0RVK2 | Negative | 3478261 - 3480501 | 85393.9 |
| polysialic acid transport protein kpsm | PH7735_03291 | Not Available | Negative | 3480588 - 3481379 | 29546.7 |
| vi polysaccharide export inner membrane protein vexd | PH7735_03292 | Not Available | Positive | 3481492 - 3482784 | 47698.5 |
| polysialic acid transport atp-binding protein kpst | PH7735_03293 | P24586 | Positive | 3482781 - 3483458 | 24440.7 |
| ribonuclease d | PH7735_03294 | A9H9B7 | Positive | 3483531 - 3484142 | 22878.6 |
| arabinose 5-phosphate isomerase kdsd | PH7735_03295 | Q9HVW0 | Positive | 3484142 - 3485110 | 34139.3 |
| lipopolysaccharide-assembly, lptc-related | PH7735_03296 | Not Available | Positive | 3485127 - 3485720 | 21366.2 |
| lipopolysaccharide export system protein lpta precursor | PH7735_03297 | Not Available | Positive | 3485735 - 3486220 | 17065.4 |
| lipopolysaccharide export system atp-binding protein lptb | PH7735_03298 | P33982 | Positive | 3486220 - 3486978 | 28229.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
