Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inactivated superfamily i helicase | PH7735_00289 | Not Available | Positive | 305359 - 307899 | 93116.4 |
| atp-dependent helicase/nuclease subunit a | PH7735_00290 | Q3AA35 | Positive | 307902 - 311099 | 117270.0 |
| hypothetical protein | PH7735_00291 | Not Available | Positive | 311419 - 311727 | 11577.7 |
| virulence factor mce family protein | PH7735_00292 | Not Available | Positive | 311766 - 313826 | 74287.9 |
| outer membrane protein ompab | PH7735_00293 | Not Available | Positive | 313823 - 314938 | 41804.7 |
| hypothetical protein | PH7735_00294 | Not Available | Positive | 314935 - 316278 | 51180.0 |
| n-formylmethionyl-trna deformylase | PH7735_00295 | A7ZI07 | Positive | 316271 - 319390 | 115348.0 |
| hypothetical protein | PH7735_00296 | Not Available | Positive | 319418 - 320281 | 31945.2 |
| macrolide export atp-binding/permease protein macb | PH7735_00297 | P9WQI4 | Positive | 321112 - 321807 | 24974.0 |
| acidobacterial duplicated orphan permease | PH7735_00298 | Not Available | Positive | 321801 - 323093 | 45680.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
