Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-dehydrorhamnose 3,5-epimerase | PH7735_03259 | P55468 | Positive | 3441432 - 3442055 | 23059.1 |
| dtdp-glucose 4,6-dehydratase 2 | PH7735_03260 | P27830 | Positive | 3442059 - 3443108 | 39041.8 |
| dtdp-4-dehydrorhamnose reductase | PH7735_03261 | P37778 | Positive | 3443105 - 3443968 | 30427.4 |
| glucose-1-phosphate thymidylyltransferase 1 | PH7735_03262 | B0RVK9 | Positive | 3443965 - 3444873 | 33295.8 |
| udp-glucose 6-dehydrogenase | PH7735_03263 | O33952 | Positive | 3444891 - 3446066 | 43648.7 |
| hypothetical protein | PH7735_03264 | Not Available | Positive | 3446551 - 3447315 | 29733.3 |
| hypothetical protein | PH7735_03265 | Not Available | Positive | 3447438 - 3448058 | 22707.0 |
| hypothetical protein | PH7735_03266 | Not Available | Positive | 3448097 - 3448798 | 26317.9 |
| hypothetical protein | PH7735_03267 | Not Available | Positive | 3448814 - 3449431 | 22372.4 |
| hypothetical protein | PH7735_03268 | Not Available | Positive | 3449516 - 3451546 | 77396.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
