Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_03249 | P17985 | Positive | 3428806 - 3428988 | 6786.25 |
| pyrroloquinoline quinone biosynthesis protein pqqe | PH7735_03250 | Not Available | Negative | 3429216 - 3430214 | 37935.4 |
| universal stress protein f | PH7735_03251 | Not Available | Negative | 3430435 - 3430863 | 15511.9 |
| trap transporter, 4tm/12tm fusion protein | PH7735_03252 | Not Available | Negative | 3430860 - 3433463 | 92822.0 |
| trap transporter solute receptor, taxi family | PH7735_03253 | Not Available | Negative | 3433560 - 3434531 | 33783.9 |
| putative hth-type transcriptional regulator ybbh | PH7735_03254 | Not Available | Negative | 3434636 - 3435523 | 32951.6 |
| aminomethyltransferase | PH7735_03255 | Q99LB7 | Positive | 3435669 - 3438062 | 85455.9 |
| 3-keto-5-aminohexanoate cleavage enzyme | PH7735_03256 | Not Available | Positive | 3438066 - 3438824 | 26982.7 |
| taurine--pyruvate aminotransferase | PH7735_03257 | O94562 | Positive | 3438821 - 3440146 | 47428.8 |
| carnitine catabolism transcriptional activator | PH7735_03258 | Not Available | Positive | 3440298 - 3441323 | 37813.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
