Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transfer relaxase protein trai | PH7735_03239 | Not Available | Negative | 3403172 - 3404053 | 31575.8 |
| hypothetical protein | PH7735_03240 | Not Available | Negative | 3404050 - 3404343 | 10810.8 |
| putative transcriptional regulator | PH7735_03241 | Not Available | Negative | 3404444 - 3404626 | 6993.32 |
| prophage cp4-57 integrase | PH7735_03242 | Not Available | Negative | 3405162 - 3406388 | 45418.5 |
| hypothetical protein | PH7735_03243 | Not Available | Negative | 3406385 - 3406522 | 4816.75 |
| hypothetical protein | PH7735_03244 | Not Available | Negative | 3407030 - 3407188 | 5995.47 |
| vcbs repeat | PH7735_03245 | Not Available | Negative | 3407281 - 3413442 | 217695.0 |
| hypothetical protein | PH7735_03246 | Not Available | Negative | 3413994 - 3414128 | 4780.39 |
| hypothetical protein | PH7735_03247 | Not Available | Negative | 3414816 - 3414998 | 6741.44 |
| cyclolysin | PH7735_03248 | Not Available | Positive | 3415888 - 3428577 | 437673.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
