Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide methionine sulfoxide reductase msrb | PH7735_03219 | P65447 | Positive | 3373863 - 3374309 | 16468.0 |
| peptide methionine sulfoxide reductase msra 3 | PH7735_03220 | Q7UJI2 | Positive | 3374311 - 3374811 | 18836.9 |
| acetophenone carboxylase gamma subunit | PH7735_03221 | Q01262 | Negative | 3374871 - 3376877 | 70775.6 |
| epoxyqueuosine reductase | PH7735_03222 | F7ZDR3 | Negative | 3376987 - 3378027 | 38632.9 |
| putative gst-like protein yibf | PH7735_03223 | A0A0H3CDY2 | Negative | 3378110 - 3378775 | 25976.2 |
| penicillin-binding protein 2d | PH7735_03224 | Q28VR9 | Negative | 3378832 - 3379587 | 28374.1 |
| glutamate synthase | PH7735_03225 | Q05755 | Negative | 3379756 - 3384294 | 164234.0 |
| hypothetical protein | PH7735_03226 | Not Available | Negative | 3384399 - 3385052 | 23385.6 |
| hypothetical protein | PH7735_03227 | Not Available | Negative | 3385049 - 3385468 | 14925.3 |
| glutamate synthase | PH7735_03228 | Q05756 | Negative | 3385577 - 3387010 | 51634.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
