Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_03209 | Not Available | Positive | 3362871 - 3363842 | 36699.4 |
| putative inner membrane transporter yije | PH7735_03210 | Not Available | Positive | 3363909 - 3364784 | 30884.8 |
| thiol:disulfide interchange protein precursor | PH7735_03211 | Not Available | Positive | 3364843 - 3365556 | 24666.8 |
| thioredoxin | PH7735_03212 | Not Available | Positive | 3365574 - 3365990 | 15078.2 |
| gcv operon activator | PH7735_03213 | Not Available | Negative | 3366021 - 3366944 | 34508.3 |
| trimethylamine:corrinoid methyltransferase | PH7735_03214 | Q24SP7 | Positive | 3367040 - 3368563 | 55779.5 |
| crotonyl-coa reductase | PH7735_03215 | Q08257 | Positive | 3368627 - 3369706 | 37790.8 |
| aminomethyltransferase | PH7735_03216 | Not Available | Positive | 3369734 - 3372184 | 90122.0 |
| carnitine catabolism transcriptional activator | PH7735_03217 | Not Available | Positive | 3372206 - 3373201 | 36828.2 |
| hypothetical protein | PH7735_03218 | O08368 | Negative | 3373202 - 3373726 | 19328.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
