Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_03199 | Not Available | Positive | 3353793 - 3354017 | 8218.7 |
| selt/selw/selh selenoprotein domain protein | PH7735_03200 | Not Available | Negative | 3354074 - 3354364 | 10830.1 |
| acyl-coa dehydrogenase | PH7735_03201 | Q5RAS0 | Negative | 3354368 - 3355531 | 43106.3 |
| carnitine catabolism transcriptional activator | PH7735_03202 | Q9HTH5 | Positive | 3355610 - 3356557 | 35147.9 |
| aldolase ii superfamily protein | PH7735_03203 | Q9QYB8 | Negative | 3356651 - 3357406 | 28284.2 |
| gcv operon activator | PH7735_03204 | P52658 | Positive | 3357525 - 3358406 | 32870.1 |
| glyoxalase-like domain protein | PH7735_03205 | Not Available | Negative | 3358435 - 3358857 | 15395.3 |
| adenine deaminase | PH7735_03206 | Q5LM18 | Positive | 3358889 - 3360739 | 65597.6 |
| amp nucleosidase | PH7735_03207 | P0AE13 | Positive | 3360736 - 3362217 | 54687.8 |
| dna-binding protein hu | PH7735_03208 | Not Available | Positive | 3362405 - 3362692 | 9932.24 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
