Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family protein | PH7735_03189 | P31078 | Positive | 3343851 - 3344348 | 18675.3 |
| transcriptional regulatory protein ompr | PH7735_03190 | P31079 | Positive | 3344345 - 3345046 | 26334.1 |
| hypothetical protein | PH7735_03191 | Not Available | Positive | 3345135 - 3345626 | 17583.5 |
| histone deacetylase-like amidohydrolase | PH7735_03192 | P72702 | Positive | 3345727 - 3346662 | 33541.5 |
| exodeoxyribonuclease 7 small subunit | PH7735_03193 | Q5LX40 | Positive | 3346659 - 3346901 | 8706.35 |
| farnesyl diphosphate synthase | PH7735_03194 | P45204 | Positive | 3346903 - 3347772 | 30730.8 |
| 1-deoxy-d-xylulose-5-phosphate synthase | PH7735_03195 | Q5LX42 | Positive | 3347788 - 3349716 | 68175.9 |
| nad dependent epimerase/dehydratase family protein | PH7735_03196 | Not Available | Negative | 3349733 - 3350590 | 31700.9 |
| carnitinyl-coa dehydratase | PH7735_03197 | A8ALR7 | Negative | 3350823 - 3351608 | 28556.1 |
| acetyl coenzyme a synthetase (adp forming), alpha domain | PH7735_03198 | A0A2P1BT06 | Negative | 3351613 - 3353643 | 70985.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
