Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-4-amino-4-deoxy-l-arabinose--oxoglutarate aminotransferase | PH7735_03179 | G4WJD4 | Positive | 3333369 - 3334535 | 43308.5 |
| thiamine import atp-binding protein thiq | PH7735_03180 | Q1GCR8 | Negative | 3334532 - 3335224 | 24477.0 |
| sulfate transport system permease protein cysw | PH7735_03181 | Q8ZRV1 | Negative | 3335211 - 3336764 | 54993.0 |
| thiamine-binding periplasmic protein precursor | PH7735_03182 | Q7CR85 | Negative | 3336740 - 3337717 | 35071.2 |
| hypothetical protein | PH7735_03183 | Not Available | Positive | 3337987 - 3338118 | 4718.86 |
| chorismate synthase | PH7735_03184 | Q1GCR5 | Positive | 3338139 - 3339242 | 39785.2 |
| putative transporter yfdv | PH7735_03185 | Not Available | Positive | 3339264 - 3340205 | 32615.5 |
| long-chain-fatty-acid--coa ligase | PH7735_03186 | O07610 | Negative | 3340210 - 3341712 | 54120.7 |
| carboxylate/amino acid/amine transporter | PH7735_03187 | Not Available | Positive | 3341833 - 3342753 | 33082.6 |
| branched-chain-amino-acid aminotransferase | PH7735_03188 | Not Available | Negative | 3342813 - 3343682 | 31856.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
