Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| long-chain-fatty-acid--coa ligase | PH7735_03129 | Not Available | Negative | 3273994 - 3275496 | 53761.1 |
| 1,2-epoxyphenylacetyl-coa isomerase | PH7735_03130 | P77467 | Negative | 3275523 - 3276302 | 27251.0 |
| putative domain 1 | PH7735_03131 | Not Available | Negative | 3276299 - 3276718 | 14712.8 |
| acyl-coa dehydrogenase | PH7735_03132 | Q5P5Z9 | Negative | 3276715 - 3277809 | 39079.4 |
| acyl-coa dehydrogenase | PH7735_03133 | P95280 | Negative | 3277825 - 3279021 | 43940.4 |
| 3-ketoacyl-coa thiolase | PH7735_03134 | Not Available | Negative | 3279033 - 3280208 | 41128.3 |
| fatty acid oxidation complex subunit alpha | PH7735_03135 | Not Available | Negative | 3280220 - 3282310 | 74250.4 |
| putative iron-regulated protein | PH7735_03136 | Not Available | Positive | 3282558 - 3283826 | 44911.9 |
| hypothetical protein | PH7735_03137 | Not Available | Positive | 3283898 - 3284917 | 34860.0 |
| putative thiol oxidoreductase | PH7735_03138 | Not Available | Positive | 3284974 - 3286506 | 56056.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
