Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytosine deaminase | PH7735_03119 | Not Available | Positive | 3263558 - 3264769 | 43171.8 |
| putative fad-linked oxidoreductase | PH7735_03120 | H6LBS1 | Positive | 3264773 - 3266182 | 51774.8 |
| alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase | PH7735_03121 | P83309 | Positive | 3266196 - 3267086 | 33750.0 |
| hemin-binding lipoprotein | PH7735_03122 | A0A0H2ZGV2 | Positive | 3267173 - 3268834 | 61095.4 |
| hypothetical protein | PH7735_03123 | Not Available | Positive | 3268911 - 3269393 | 17873.0 |
| high-affinity zinc uptake system protein znua precursor | PH7735_03124 | Q2YJH5 | Negative | 3269383 - 3270459 | 38777.6 |
| zinc uptake regulation protein | PH7735_03125 | Not Available | Positive | 3270552 - 3271028 | 17212.8 |
| zinc import atp-binding protein znuc | PH7735_03126 | Q1GL85 | Positive | 3271025 - 3271780 | 27159.6 |
| high-affinity zinc uptake system membrane protein znub | PH7735_03127 | P39832 | Positive | 3271773 - 3272570 | 27210.1 |
| esterase estb | PH7735_03128 | Q9KX40 | Negative | 3272598 - 3273842 | 44403.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
