Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| colicin uptake protein tolq | PH7735_03099 | Not Available | Negative | 3242818 - 3243483 | 23563.6 |
| glyoxalase-like domain protein | PH7735_03100 | Not Available | Negative | 3243473 - 3243865 | 14682.4 |
| hemin import atp-binding protein hmuv | PH7735_03101 | Q28QF9 | Negative | 3243867 - 3244652 | 27562.0 |
| hemin transport system permease protein hmuu | PH7735_03102 | Q56992 | Negative | 3244657 - 3245733 | 36657.9 |
| hemin-binding periplasmic protein hmut precursor | PH7735_03103 | Q56991 | Negative | 3245733 - 3246602 | 30080.3 |
| hemin transport protein hems | PH7735_03104 | Not Available | Negative | 3246599 - 3247651 | 38650.2 |
| tonb-dependent heme receptor a precursor | PH7735_03105 | Q7VNU1 | Positive | 3247879 - 3249918 | 73632.8 |
| putative oxidoreductase czco | PH7735_03106 | Q5L2G3 | Positive | 3250188 - 3251444 | 45195.9 |
| benzene 1,2-dioxygenase subunit alpha | PH7735_03107 | F0KFI5 | Positive | 3251460 - 3252626 | 43365.2 |
| biphenyl dioxygenase subunit alpha | PH7735_03108 | Not Available | Positive | 3252629 - 3253726 | 40913.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
