Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| short chain dehydrogenase | PH7735_03089 | A0A0B6VQ48 | Negative | 3233439 - 3234494 | 38145.5 |
| serine 3-dehydrogenase | PH7735_03090 | P0CU01 | Negative | 3234516 - 3235328 | 29070.8 |
| virulence-regulating protein virs | PH7735_03091 | Not Available | Negative | 3235432 - 3236427 | 37389.0 |
| isoquinoline 1-oxidoreductase subunit alpha | PH7735_03092 | Q51697 | Positive | 3236603 - 3237061 | 15973.9 |
| isoquinoline 1-oxidoreductase subunit beta | PH7735_03093 | Not Available | Positive | 3237065 - 3239305 | 80272.9 |
| hypothetical protein | PH7735_03094 | Not Available | Positive | 3239451 - 3240494 | 38445.9 |
| glutaconyl-coa decarboxylase subunit gamma | PH7735_03095 | Q9KWU4 | Negative | 3240526 - 3240837 | 11026.4 |
| hypothetical protein | PH7735_03096 | Not Available | Negative | 3241191 - 3242045 | 29743.0 |
| protein tolr | PH7735_03097 | Not Available | Negative | 3242050 - 3242433 | 13753.7 |
| biopolymer transport protein exbd | PH7735_03098 | Not Available | Negative | 3242436 - 3242813 | 13892.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
