Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tellurite resistance protein | PH7735_03079 | Not Available | Negative | 3221484 - 3221906 | 15533.5 |
| cupin domain protein | PH7735_03080 | Q5LW89 | Negative | 3221976 - 3222428 | 16043.4 |
| gcv operon activator | PH7735_03081 | Not Available | Positive | 3222519 - 3223418 | 32350.3 |
| lysine--trna ligase | PH7735_03082 | Q16AV0 | Positive | 3223522 - 3225165 | 62038.1 |
| pectate lyase superfamily protein | PH7735_03083 | Not Available | Positive | 3225357 - 3227639 | 82485.8 |
| hypothetical protein | PH7735_03084 | Not Available | Negative | 3227659 - 3227802 | 5441.87 |
| glyceraldehyde-3-phosphate dehydrogenase 2 | PH7735_03085 | P29272 | Negative | 3227893 - 3228891 | 35780.9 |
| deoxyribodipyrimidine photo-lyase | PH7735_03086 | A9CJC9 | Negative | 3229041 - 3230426 | 51681.2 |
| copper export regulator | PH7735_03087 | Q9X5V4 | Negative | 3230501 - 3230893 | 14498.2 |
| copper-transporting p-type atpase | PH7735_03088 | Q9X5X3 | Negative | 3230897 - 3233353 | 85626.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
