Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rut operon repressor | PH7735_03059 | Q8X4Z7 | Negative | 3203054 - 3203671 | 23375.3 |
| rut operon repressor | PH7735_03060 | Not Available | Negative | 3203737 - 3204372 | 23708.3 |
| n-carbamoyl-l-amino acid hydrolase | PH7735_03061 | Q6DTN4 | Positive | 3204512 - 3205762 | 44832.1 |
| d-hydantoinase/dihydropyrimidinase | PH7735_03062 | Q9I676 | Positive | 3205860 - 3207323 | 53541.6 |
| taurine import atp-binding protein taub | PH7735_03063 | Q57855 | Positive | 3207397 - 3208179 | 28855.7 |
| hypothetical protein | PH7735_03064 | Not Available | Positive | 3208166 - 3208393 | 8057.97 |
| putative aliphatic sulfonates transport permease protein ssuc | PH7735_03065 | Not Available | Positive | 3208393 - 3209268 | 31018.2 |
| putative aliphatic sulfonates transport permease protein ssuc | PH7735_03066 | Q9K9G6 | Positive | 3209265 - 3210104 | 30379.1 |
| putative thiamine biosynthesis protein | PH7735_03067 | Not Available | Positive | 3210151 - 3211140 | 35082.7 |
| thioredoxin-2 | PH7735_03068 | P0AGG6 | Positive | 3211273 - 3211704 | 15366.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
