Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_03049 | Not Available | Negative | 3190405 - 3191220 | 30399.5 |
| aminomethyltransferase | PH7735_03050 | Q54DD3 | Positive | 3191256 - 3192380 | 39719.8 |
| glycine cleavage system h protein | PH7735_03051 | C3MCZ7 | Positive | 3192402 - 3192761 | 13238.5 |
| glycine dehydrogenase | PH7735_03052 | Q16AX0 | Positive | 3192884 - 3195709 | 103544.0 |
| ftsx-like permease family protein | PH7735_03053 | Not Available | Negative | 3195762 - 3198287 | 88231.2 |
| putative abc transporter atp-binding protein/mt1014 | PH7735_03054 | P0A9T9 | Negative | 3198284 - 3198967 | 24485.6 |
| esterase tesa precursor | PH7735_03055 | Q9HZY8 | Positive | 3198982 - 3199647 | 23569.2 |
| cold shock protein cspa | PH7735_03056 | P55390 | Negative | 3199744 - 3199950 | 7288.54 |
| nad-dependent dihydropyrimidine dehydrogenase subunit pret | PH7735_03057 | P76440 | Positive | 3200294 - 3201616 | 45798.1 |
| nad-dependent dihydropyrimidine dehydrogenase subunit prea | PH7735_03058 | P25889 | Positive | 3201634 - 3202938 | 47118.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
