Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deoxyuridine 5'-triphosphate nucleotidohydrolase | PH7735_03019 | Q5LWD3 | Positive | 3156196 - 3156654 | 16071.1 |
| molybdopterin-synthase adenylyltransferase | PH7735_03020 | Q72J02 | Positive | 3156654 - 3157715 | 37701.2 |
| peptidyl-dipeptidase dcp | PH7735_03021 | P24171 | Positive | 3157794 - 3159806 | 73436.0 |
| phosphomannomutase/phosphoglucomutase | PH7735_03022 | Q88C93 | Negative | 3159876 - 3161372 | 54643.1 |
| 2-dehydro-3-deoxyphosphooctonate aldolase | PH7735_03023 | Q11HU7 | Negative | 3161393 - 3162226 | 29268.4 |
| vi polysaccharide export inner membrane protein vexd | PH7735_03024 | Not Available | Negative | 3162230 - 3163975 | 64852.5 |
| polysialic acid transport atp-binding protein kpst | PH7735_03025 | Q65E84 | Negative | 3163953 - 3164612 | 24682.7 |
| sodium/proton antiporter nhaa | PH7735_03026 | Q28L40 | Negative | 3164849 - 3166096 | 45167.8 |
| putative permease | PH7735_03027 | Not Available | Negative | 3166211 - 3167245 | 35973.7 |
| helix-turn-helix domain protein | PH7735_03028 | Not Available | Negative | 3167238 - 3167582 | 12114.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
