Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_03009 | Q5LWE2 | Positive | 3147159 - 3147548 | 14471.2 |
| glutathione synthetase | PH7735_03010 | Q8FXW6 | Positive | 3147626 - 3148561 | 34744.6 |
| monoterpene epsilon-lactone hydrolase | PH7735_03011 | P18773 | Positive | 3148570 - 3149496 | 33839.4 |
| competence protein comm | PH7735_03012 | P45049 | Negative | 3149462 - 3150976 | 53435.2 |
| glutathione s-transferase | PH7735_03013 | Not Available | Negative | 3151086 - 3151961 | 31685.4 |
| alpha-ribazole phosphatase | PH7735_03014 | Not Available | Negative | 3152020 - 3152595 | 20999.7 |
| adenosylcobinamide kinase | PH7735_03015 | P29931 | Negative | 3152592 - 3153113 | 18651.7 |
| rna polymerase sigma-32 factor | PH7735_03016 | P0CAW9 | Positive | 3153194 - 3154072 | 33426.8 |
| putative iron-regulated protein | PH7735_03017 | Not Available | Positive | 3154069 - 3154869 | 28979.3 |
| dna/pantothenate metabolism flavoprotein | PH7735_03018 | Q8DDX8 | Positive | 3154950 - 3156143 | 41920.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
