Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe/s biogenesis protein nfua | PH7735_02999 | Q9LIG6 | Negative | 3135937 - 3136500 | 19778.6 |
| universal stress protein family protein | PH7735_03000 | Not Available | Negative | 3136586 - 3137041 | 16772.4 |
| branched-chain-amino-acid aminotransferase | PH7735_03001 | O27481 | Negative | 3137106 - 3137972 | 31627.6 |
| tryptophan--trna ligase | PH7735_03002 | P67586 | Negative | 3138230 - 3139264 | 37808.2 |
| rhomboid family protein | PH7735_03003 | Not Available | Positive | 3139337 - 3140023 | 24572.3 |
| acid-resistance membrane protein | PH7735_03004 | Not Available | Negative | 3140100 - 3140615 | 17352.3 |
| putative peptidoglycan biosynthesis protein murj | PH7735_03005 | O05467 | Negative | 3140706 - 3142250 | 55530.5 |
| pii uridylyl-transferase | PH7735_03006 | Q5LWE5 | Negative | 3142247 - 3145060 | 106380.0 |
| putative lipoprotein | PH7735_03007 | Not Available | Negative | 3145020 - 3146192 | 39502.1 |
| ribosomal rna small subunit methyltransferase i | PH7735_03008 | Q98DM9 | Positive | 3146286 - 3147143 | 30376.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
