Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gcv operon activator | PH7735_02979 | P55576 | Positive | 3116273 - 3117148 | 31206.9 |
| purine nucleoside phosphorylase deod-type | PH7735_02980 | A8LJI8 | Negative | 3117128 - 3117832 | 25305.3 |
| methylmalonyl-coa mutase | PH7735_02981 | Q3IZ90 | Negative | 3117972 - 3119939 | 71859.0 |
| glycerol-3-phosphate acyltransferase | PH7735_02982 | B1JBS6 | Positive | 3120244 - 3121602 | 51017.6 |
| crotonyl-coa reductase | PH7735_02983 | Q3IZ91 | Positive | 3121760 - 3123049 | 47611.5 |
| hypothetical protein | PH7735_02984 | Not Available | Positive | 3123290 - 3123505 | 7728.03 |
| hth-type quorum sensing-dependent transcriptional regulator vjbr | PH7735_02985 | O54452 | Positive | 3123444 - 3124163 | 27077.1 |
| acyl-homoserine-lactone synthase | PH7735_02986 | Not Available | Positive | 3124255 - 3124893 | 24061.7 |
| dtr system orit relaxase | PH7735_02987 | Not Available | Positive | 3124948 - 3126474 | 56420.8 |
| 2-(r)-hydroxypropyl-com dehydrogenase | PH7735_02988 | A7AZH2 | Positive | 3126471 - 3127205 | 26327.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
